2023
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Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking
J. Biochem. mvad118 (2023)
Kazuyuki Tao, Shin-ichiro Narita, Ui Okada, Satoshi Murakami and Hajime Tokuda
Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism
Proc. Natl. Acad. Sci. USA 120 e2215072120 (2023)
Takaaki Kato, Ui Okada, Li-Wei Hung, Eiki Yamashita, Heung-Bok Kim, Chang Yub Kim, Thomas C. Terwilliger, Herbert P. Schweizer and Satoshi Murakami
Structure-based analysis of transient interactions between ketosynthase-like decarboxylase and acyl carrier protein in a loading module of modular polyketide synthase
ACS Chem. Biol. 18 1398-1404 (2023)
Taichi Chisuga, Satoshi Murakami, Akimasa Miyanaga, Fumitaka Kudo, and Tadashi Eguch
Identification of key amino acid residues in OqxB mediated efflux of fluoroquinolones using site-directed mutagenesis
Res. Microbiol. 174 (4) 104039 (2023)
Purnendu Bhowmik, Nagakumar Bharatham, Satoshi Murakami, Vasanthi Ramachandran and Santanu Datta
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2022
2021
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Structure and function relationship of OqxB efflux pump from Klebsiella pneumoniae
Nature Commun. 12 5400 (2021)
Nagakumar Bharatham, Purnendu Bhowmik, Maho Aoki, Ui Okada, Sreevalli Sharma, Eiki Yamashita, Anirudh Shanbhag, Sreenath Rajagopal, Teby Thomas, Maitrayee Sarma, Riya Narjari, Savitha Nagaraj, Vasanthi Ramachandran, Nainesh Katagihallimath, Santanu Datta and Satoshi Murakami
Engineered MATE multidrug transporters reveal two functionally distinct ion-coupling pathways in NorM from Vibrio cholerae
Commun. Biol. 4 558 (2021)
Sagar Raturi, Asha V. Nair, Keiko Shinoda, Himansha Singh, Boyan Bai, Satoshi Murakami, Hideaki Fujitani and Hendrik W. van Veen
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2020
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Structural and functional diversity calls for a new classification of ABC transporters
FEBS Lett. 594 3767-3775 (2020)
Christoph Thomas, Stephen G Aller, Konstantinos Beis, Elisabeth P Carpenter, Geoffrey Chang, Lei Chen, Elie Dassa, Michael Dean, Franck Duong Van Hoa, Damian Ekiert, Robert Ford, Rachelle Gaudet, Xin Gong, I Barry Holland, Yihua Huang, Daniel K Kahne, Hiroaki Kato, Vassilis Koronakis, Christopher M Koth, Youngsook Lee, Oded Lewinson, Roland Lill, Enrico Martinoia, Satoshi Murakami, Heather W Pinkett, Bert Poolman, Daniel Rosenbaum, Balazs Sarkadi, Lutz Schmitt, Erwin Schneider, Yigong Shi, Show-Ling Shyng, Dirk J Slotboom, Emad Tajkhorshid, D Peter Tieleman, Kazumitsu Ueda, András Váradi, Po-Chao Wen, Nieng Yan, Peng Zhang, Hongjin Zheng, Jochen Zimmer and Robert Tampé
Tripartite transporters as mechanotransmitters in periplasmic alternating-access mechanisms
FEBS Lett. 594 3908-3919 (2020)
Satoshi Murakami, Ui Okada and Hendrik W van Veen
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2019
2018
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Crystallization of aspirin form II by femtosecond laser irradiation
Appl. Phys. Express 12 015507 (2018)
Yuka Tsuri, Mihoko Maruyama, Riki Fujimoto, Shino Okada, Hiroaki Adachi, Hiroshi Y. Yoshikawa, Kazufumi Takano, Satoshi Murakami, Hiroyoshi Matsumura, Tsuyoshi Inoue, Katsuo Tsukamoto, Masayuki Imanishi, Masashi Yoshimura and Yusuke Mori
BpeB, a major resistance-nodulation-cell division transporter from Burkholderia cenocepacia: construct design, crystallization and preliminary structural analysis
Acta Crystallogr. F74 710-716 (2018)
Tomonari Horikawa, Li-Wei Hung, Heung-Bok Kim, David Shaya, Chang-Yub Kim, Thomas C. Terwilliger, Eiki Yamashita, Maho Aoki, Ui Okada and Satoshi Murakami
Growth of high-quality metastable crystal of acetaminophen using solution-mediated phase transformation at low supersaturation
J. Crystal Growth 502 76-82 (2018)
Riki Fujimoto, Mihoko Maruyama, Yoichiro Mori, Shino Okada, Hiroaki Adachi, Hiroshi Y. Yoshikawa, Kazufumi Takano, Satoshi Murakami, Hiroyoshi Matsumura, Tsuyoshi Inoue, Masayuki Imanishi, Katsuo Tsukamoto, Masashi Yoshimura and Yusuke Mori
Atomic-Scale Imaging of Surface and Hydration Structures of Stable and Metastable Acetaminophen Crystals by Frequency Modulation Atomic Force Microscopy
J. Phys. Chem. C 122 21983-90 (2018)
Naritaka Kobayashi, Mihoko Maruyama, Yoichiro Mori, Suguru Fukukita, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Hiroyoshi Matsumura, Tsuyoshi Inoue, Masashi Yoshimura, Seiichiro Nakabayashi, Yusuke Mori and Hiroshi Y. Yoshikawa
Powering the ABC multidrug exporter LmrA: How nucleotides embrace the ion-motive force
Sci. Adv. 4 eaas9365 (2018)
Kelvin Agboh, Calvin H. F. Lau, Yvonne S. K. Khoo, Himansha Singh, Sagar Raturi, Asha V. Nair, Julie Howard, Marco Chiapello, Renata Feret, Michael J. Deery, Satoshi Murakami and Hendrik W. van Veen
Structure of the γ-ε complex of cyanobacterial F1-ATPase reveals a suppression mechanism of the γ subunit on ATP-hydrolysis in phototrophs
Biochem J. 475 2925-2939 (2018)
Satoshi Murakami, Kumiko Kondo, Shinya Katayama, Satoshi Hara, Ei-ichiro Sunamura, Eiki Yamashita, Georg Groth and Toru Hisabori
Energetics and conformational pathways of functional rotation in the multidrug transporter AcrB
eLIFE 7 e31715 (2018)
Yasuhiro Matsunaga, Tsutomu Yamane, Tohru Terada, Kei Moritsugu, Hiroshi Fujisaki, Satoshi Murakami, Mitsunori Ikeguchi and Akinori Kidera
Improvement of metastable crystal of acetaminophen via control of crystal growth rate
Appl. Phys. Express 11 035501 (2018)
Kosuke Nii, Mihoko Maruyama, Shino Okada, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Hiroshi Y. Yoshikawa, Hiroyoshi Matsumura, Tsuyoshi Inoue, Masayuki Imanishi, Katsuo Tsukamoto, Masashi Yoshimura and Yusuke Mori
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2017
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Crystal structure of tripartite-type ABC transporter MacB from Acinetobacter baumannii
Nature Commun. 8 1336 (2017)
Ui Okada, Eiki Yamashita, Arthur Neuberger, Mayu Morimoto, Hendrik W. van Veen and Satoshi Murakami
Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump
Nature Microbiol. 2 17070 (2017)
Anthony W.P. Fitzpatrick, Salomé Llabrés, Arthur Neuberger, James N. Blaza, Xiao-chen Bai, Ui Okada, Satoshi Murakami, Hendrik W. van Veen, Ulrich Zachariae, Sjors H.W. Scheres1, Ben F. Luisi and Dijun Du
Crystallization of acetaminophen form II by plastic-ball-assisted ultrasonic irradiation
Appl. Phys. Express 10 025501 (2017)
Yoichiro Mori, Mihoko Maruyama, Yoshinori Takahashi, Hiroshi Y. Yoshikawa, Shino Okada, Hiroaki Adachi, Shigeru Sugiyama, Kazufumi Takano, Satoshi Murakami, Hiroyoshi Matsumura, Tsuyoshi Inoue, Masashi Yoshimura and Yusuke Mori
Metastable crystal growth of acetaminophen using solution-mediated phase transformation
Appl. Phys. Express 10 015501 (2017)
Yoichiro Mori, Mihoko Maruyama, Yoshinori Takahashi, Hiroshi Y. Yoshikawa, Shino Okada, Hiroaki Adachi, Shigeru Sugiyama, Kazufumi Takano, Satoshi Murakami, Hiroyoshi Matsumura, Tsuyoshi Inoue, Masashi Yoshimura and Yusuke Mori
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2016
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Promotion of protein crystal growth by actively switching crystal growth mode via femtosecond laser ablation
Nature Photonics 10 723-726 (2016)
Yusuke Tominaga, Mihoko Maruyama, Masashi Yoshimura, Haruhiko Koizumi, Masaru Tachibana, Shigeru Sugiyama, Hiroaki Adachi, Katsuo Tsukamoto, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Hiroshi Y. Yoshikawa and Yusuke Mori
Structures and Transport Mechanisms of RND Efflux Pumps
Efflux-Mediated Antimicrobial Resistance in Bacteria: Mechanisms, Regulation and Clinical Implications, 1st ed. 3-28 (2016)
Satoshi Murakami
A crystallization technique for obtaining large protein crystals with increased mechanical stability using agarose gel combined with a stirring technique
J. Cryst. Growth 452 172-178 (2016)
Mihoko Maruyama, Yuki Hayashi, Hiroshi Y. Yoshikawa, Shino Okada, Haruhiko Koizumi, Masaru Tachibana, Shigeru Sugiyama, Hiroaki Adachi, Hiroyoshi Matsumura, Tsuyoshi Inoue, Kazufumi Takano, Satoshi Murakami, Masashi Yoshimura and Yusuke Mori
Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase
Int. J. Biochem. Cell Biol. 76 87-97 (2016)
Shigeru Sugiyama, Sae Ishikawa, Hideyuki Tomitori, Mayumi Niiyama, Mika Hirose, Yuma Miyazaki, Kyohei Higashi, Michio Murata, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Keiko Kashiwagi, Kazuei Igarashi and Hiroyoshi Matsumura
Protein crystallization with paper
Jpn. J. Appl. Phys. 55 050302 (2016)
Miki Matsuoka, Keisuke Kakinouchi, Hiroaki Adachi, Mihoko Maruyama, Shigeru Sugiyama, Satoshi Sano, Hiroshi Y. Yoshikawa, Yoshinori Takahashi, Masashi Yoshimura, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Kazufumi Takano
Growth of high-strength protein crystals with nanofibers
Appl. Phys. Express 9 035503 (2016)
Miki Matsuoka, Keisuke Kakinouchi, Hiroaki Adachi, Mihoko Maruyama, Shigeru Sugiyama, Iori Nakabayashi, Hiroshi Tsuchikura, Atsushi Kuwahara, Satoshi Sano, Hiroshi Y. Yoshikawa, Yoshinori Takahashi, Masashi Yoshimura, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Kazufumi Takano
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2015
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Structure, mechanism and cooperation of bacterial multidrug transporters
Curr. Opin. Struct. Biol. 33 76-91 (2015)
Dijun Du, Hendrik W van Veen, Satoshi Murakami, Klaas M Pos and Ben F Luisi
Development of protein seed crystals reinforced with high-strength hydrogels
Cryst. Eng. Comm. 17 8064-71 (2015)
Shigeru Sugiyama, Noriko Shimizu, Keisuke Kakinouchi, Osamu Hiraoka, Hiroyoshi Matsumura, Hiroshi Y. Yoshikawa, Yoshinori Takahashi, Mihoko Maruyama, Masashi Yoshimura, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Michio Murata and Yusuke Mori
Selective crystallization of metastable phase of acetaminophen by ultrasonic irradiation
Appl. Phys. Express 8 065501 (2015)
Yoichiro Mori, Mihoko Maruyama, Yoshinori Takahashi, Kenji Ikeda, Suguru Fukukita, Hiroshi Y. Yoshikawa, Shino Okada, Hiroaki Adachi, Shigeru Sugiyama, Kazufumi Takano, Satoshi Murakami, Hiroyoshi Matsumura, Tsuyoshi Inoue, Masashi Yoshimura and Yusuke Mori
Spiral Growth Can Enhance Both the Normal Growth Rate and Quality of Tetragonal Lysozyme Crystals Grown under a Forced Solution Flow
Cryst. Growth Des. 15 2137-2143 (2015)
Yuki Hayashi, Mihoko Maruyama, Masashi Yoshimura, Shino Okada, Hiroshi Y. Yoshikawa, Shigeru Sugiyama, Hiroaki Adachi, Hiroyoshi Matsumura, Tsuyoshi Inoue, Kazufumi Takano, Satoshi Murakami and Yusuke Mori
Selective crystallization of the metastable phase of indomethacin at the interface of liquid/air bubble induced by femtosecond laser irradiation
Appl. Phys. Express 8 045501 (2015)
Kenji Ikeda, Mihoko Maruyama, Yoshinori Takahashi, Yoichiro Mori, Hiroshi Y. Yoshikawa, Shino Okada, Hiroaki Adachi, Shigeru Sugiyama, Kazufumi Takano, Satoshi Murakami, Hiroyoshi Matsumura, Tsuyoshi Inoue, Masashi Yoshimura and Yusuke Mori
Preliminary X-ray analysis of the binding domain of the soybean vacuolar sorting receptor complexed with a sorting determinant of a seed storage protein
Acta Crystallogr. F71 132-5 (2015)
Nobuyuki Maruyama, Tomohiro Goshi, Shigeru Sugiyama, Mayumi Niiyama, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue,Yusuke Mori, Hiroyoshi Matsumura and Bunzo Mikam
Water-Mediated Recognition of Simple Alkyl Chains by Heart-Type Fatty-Acid-Binding Protein
Angew. Chem. Int. Ed. Engl. 54(4) 1508-11 (2015)
Shigeru Matsuoka, Shigeru Sugiyama, Daisuke Matsuoka, Mika Hirose, Sébastien Lethu, Hikaru Ano, Toshiaki Hara, Osamu Ichihara, S. Roy Kimura, Satoshi Murakami, Hanako Ishida, Eiichi Mizohata, Tsuyoshi Inoue and Michio Murata
Molecular Mechanism of Multi-drug Efflux Transporter, AcrB Revealed by the Synergy between Molecular Dynamics Simulation and Crystallography
Seibutsu Butsuri 55 27-30 (2015)
Satoshi Murakami, Tsutomu Yamane, Mitsunori Ikeguchi and Shoji Takada
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2014
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Crystallization and preliminary crystallographic studies of PotA, a membrane-associated ATPase of the spermidine-preferential uptake system in Thermotoga maritima
Acta Crystallogr. F70 738-741 (2014)
Shigeru Sugiyama, Keiko Kashiwagi, Keisuke Kakinouchi, Hideyuki Tomitori, Ken Kanai, Michio Murata, Hiroaki Adachi, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Kazuei Igarashi
A new practical technique for high quality protein crystallization with the solution stirring technique at the interface between high-concentrated hydrogel and solution
Jpn. J. Appl. Phys. 53 065502 (2014)
Yusuke Aoki, Mihoko Maruyama, Yoshinori Takahashi, Masashi Yoshimura, Hiroshi Y. Yoshikawa, Shigeru Sugiyama, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Hiroyoshi Matsumura, Tsuyoshi Inoue and Yusuke Mori
β-Lactam Selectivity of Multidrug Transporters AcrB and AcrD Resides in the Proximal Binding Pocket
J. Biol. Chem. 289 (15) 10680-90 (2014)
Naoki Kobayashi, Norihisa Tamura, Hendrik W. van Veen, Akihito Yamaguchi and Satoshi Murakami
Laser ablation for protein crystal nucleation and seeding
Chem. Soc. Rev. 43 2147-2158 (2014)
Hiroshi Y. Yoshikawa, Ryota Murai, Hiroaki Adachi, Shireru Sugiyama, Mihoko Maruyama, Yoshinori Takahashi, Kazufumi Takano, Hiroyoshi Matsumura, Tsuyoshi Inoue, Satoshi Murakami, Hiroshi Masuhara and Yusuke Mori
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2013
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RND efflux pumps: structural information translated into function and inhibition mechanisms
Curr. Top. Med. Chem. 13 (20) 3079-100 (2013)
Paolo Ruggerone, Satoshi Murakami, Klaas M. Pos and Attilio V. Vargiu
Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid
J. Synchrotron Rad. 20 923-928 (2013)
Mika Hirose, Shigeru Sugiyama, Hanako Ishida, Mayumi Niiyama, Daisuke Matsuoka, Toshiaki Hara, Eiichi Mizohata, Satoshi Murakami, Tsuyoshi Inoue, Shigeru Matsuoka and Michio Murata
Functional rotation induced by alternating protonation states in the multidrug transporter AcrB: all-atom molecular dynamics simulations
Biochemistry 52 (43) 7648-58 (2013)
Tsutomu Yamane, Satoshi Murakami and Mitsunori Ikeguchi
Crystal structure of AcrB complexed with linezolid at 3.5 Å resolution
J. Struct. Funct. Genomics 14 (2) 71-75 (2013)
Li-Wei Hung, Heung-Bok Kim, Satoshi Murakami, Goutam Gupta, Chang-Yub Kim and Thomas C. Terwilliger
Mutation of the Mg2+ transporter SLC41A1 results in a nephronophthisis-like phenotype
J. Am. Soc. Nephrol. 24 (6) 967-977 (2013)
Toby W. Hurd, Edgar A. Otto, Eikan Mishima, Heon Yung Gee, Hana Inoue, Masato Inazu, Hideomi Yamada, Jan Halbritter, George Seki, Masato Konishi, Weibin Zhou, Tsutomo Yamane, Satoshi Murakami, Gianluca Caridi, Gianmarco Ghiggeri, Takaaki Abe and Friedhelm Hildebrandt
Drug uptake pathways of multidrug transporter AcrB studied by molecular simulations and site-directed mutagenesis experiments
J. Am. Chem. Soc. 135 (20) 7474-85 (2013)
Xin-Qui Yao, Nobuhiro Kimura, Satoshi Murakami and Shoji Takada
Expression, purification, crystallization and preliminary crystallographic analysis of spermidine acetyltransferase from Escherichia coli
Acta Crystallogr. F69 884-887 (2013)
Mayumi Niiyama, Shigeru Sugiyama, Mika Hirose, Sae Ishikawa, Hideyuki Tomitori, Kyohei Higashi, Tomoko Yamashita, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Michio Murata, Tsuyoshi Inoue, Yusuke Mori, Keiko Kashiwagi, Hiroyoshi Matsumura and Kazuei Igarashi
A Novel Approach for Protein Crystallization by a Synthetic Hydrogel with Thermoreversible Gelation Polymer
Cryst. Growth Des. 13 1899-1904 (2013)
Shigeru Sugiyama, Noriko Shimizu, Gen Sazaki, Mika Hirose, Yoshinori Takahashi, Mihoko Maruyama, Hiroyoshi Matsumura, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue and Yusuke Mori
Effect of Gel-Solution Interface on Femtosecond Laser-Induced Nucleation of Protein
Cryst. Growth Des. 13 1491-1496 (2013)
Satoshi Nakayama, Hiroshi Y. Yoshikawa, Ryota Murai, Masateru Kurata, Mihoko Maruyama, Shigeru Sugiyama, Yusuke Aoki, Yoshinori Takahashi, Masashi Yoshimura, Seiichiro Nakabayashi, Hiroaki Adachi, Hiroyoshi Matsumura, Tsuyoshi Inoue, Kazufumi Takano, Satoshi Murakami and Yusuke Mori
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2012
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Spatially Precise, Soft Microseeding of Single Protein Crystals by Femtosecond Laser Ablation
Cryst. Growth Des. 12 4334-4339 (2012)
Hiroshi Y. Yoshikawa, Yoichiroh Hosokawa, Ryota Murai, Gen Sazaki, Tomoya Kitatani, Hiroaki Adachi, Tsuyoshi Inoue, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Seiichiro Nakabayashi, Yusuke Mori and Hiroshi Masuhara
Effects of a Forced Solution Flow on the Step Advancement on {110} Faces of Tetragonal Lysozyme Crystals: Direct Visualization of Individual Steps under a Forced Solution Flow
Cryst. Growth Des.12 2856-2863 (2012)
Mihoko Maruyama, Hisato Kawahara, Gen Sazaki, Syou Maki, Yoshinori Takahashi, Hiroshi Y. Yoshikawa, Shigeru Sugiyama, Hiroaki Adachi, Kazufumi Takano, Hiroyoshi Matsumura, Tsuyoshi Inoue, Satoshi Murakami and Yusuke Mori
Growth of protein crystals in hydrogels prevents osmotic shock
J. Am. Chem. Soc.134 5786-5789 (2012)
Shigeru Sugiyama, Mihoko Maruyama, Gen Sazaki, Mika Hirose, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Hiroyoshi Matsumura
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2011
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Crystallization and preliminary X-ray crystallographic analysis of a helicase-like domain from a tomato mosaic virus replication protein
Acta Crystallogr. F67(12) 1649-1652 (2011)
Hongyu Xiang, Mayumi Niiyama, Shigeru Sugiyama, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Masayuki Ishikawa, Hiroyoshi Matsumura and Etsuko Katoh
Influence of energy and wavelength on femtosecond laser-induced nucleation of protein
Chemical Physics Letters 510 139-142 (2011)
Ryota Murai, Hiroshi Y. Yoshikawa, Hitoshi Hasenaka, Yoshinori Takahashi, Mihoko Maruyama, Shigeru Sugiyama, Hiroaki Adachi, Kazufumi Takano, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue and Yusuke Mori
Growth of Protein Crystals by Syringe-Type Top-Seeded Solution Growth
Cryst. Growth Des. 11 1486-1492 (2011)
Hiroyoshi Matsumura, Keisuke Kakinouchi, Tsutomu Nakamura, Shigeru Sugiyama, Mihoko Maruyama, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue and Yusuke Mori
Laser-induced nucleation in protein crystallization: Local increase in protein concentration induced by femtosecond laser irradiation
J. Cryst. Growth 318 741-744 (2011)
Natsuko Iefuji, Ryota Murai, Mihoko Maruyama, Yoshinori Takahashi, Shigeru Sugiyama, Hiroaki Adachi, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Yuichi Koga, Kazufumi Takano and Shigenori Kanaya
Effect of Evaporation on Protein Crystals Grown in Semi-Solid Agarose Hydrogel
Jpn. J. Appl. Phys. 50 025502@1-4 (2011)
Shigeru Sugiyama, Mika Hirose, Noriko Shimizu, Mayumi Niiyama, Mihoko Maruyama, Gen Sazaki, Ryota Murai, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Hiroyoshi Matsumura
Approach for growth of high-quality and large protein crystals
J. Synchrotron Rad. 18 16-19 (2011)
Hiroyoshi Matsumura, Shigeru Sugiyama, Mika Hirose, Keisuke Kakinouchi, Mihoko Maruyama, Ryota Murai, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Yusuke Mori and Tsuyoshi Inoue
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2010
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Conformational plasticity of RNA for target recognition as revealed by the 2.15 Å crystal structure of a human IgG-aptamer complex
Nucleic Acids Res. 38 7822-9 (2010)
Yusuke Nomura, Shigeru Sugiyama, Taiichi Sakamoto, Shin Miyakawa, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Yoshikazu Nakamura and Hiroyoshi Matsumura
Drug export and allosteric coupling in a multidrug transporter revealed by molecular simulations
Nature Commun 1 117 (2010)
Xin-Qiu Yao, Hiroo Kenzaki, Satoshi Murakami and Shoji Takada
Comparison of the envelope architecture of E. coli using two methods CEMOVIS and cryo-electron tomography
J Electron Microsc 59 419-26 (2010)
Aiko Kishimoto-Okada, Satoshi Murakami, Yoshiko Ito, Noritaka Horii, Hiromitsu Furukawa, Junichi Takagi and Kenji Iwasaki
Estimated effects of silicone glue on protein crystal growth
J. Cryst. Growth 312 2771-2774 (2010)
Mihoko Maruyama, Noriko Shimizu, Shigeru Sugiyama, Yoshinori Takahashi, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Hiroyoshi Matsumura and Yusuke Mori
Crystal Growth Procedure of HIV-1 Protease-Inhibitor KNI-272 Complex for Neutron Structural Analysis at 1.9 Å Resolution
Cryst. Growth Des. 10 2990-2994 (2010)
Noriko Shimizu, Shigeru Sugiyama, Mihoko Maruyama, Yoshinori Takahashi, Motoyasu Adachi, Taro Tamada, Koushi Hidaka, Yoshio Hayashi, Tooru Kimura, Yoshiaki Kiso, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Ryota Kuroki, Yusuke Mori and Hiroyoshi Matsumura
Growth of large protein crystals by a large-scale hanging-drop method
J. Appl. Cryst. 43 937-939 (2010)
Keisuke Kakinouchi, Tsutomu Nakamura, Taro Tamada, Hiroaki Adachi, Shigeru Sugiyama, Mihoko Maruyama, Yoshinori Takahashi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Ryota Kuroki, Yusuke Mori and Hiroyoshi Matsumura
Molecular resolution investigation of tetragonal lysozyme(110) face in liquid by frequency-modulation atomic force microscopy
J. Vac. Sci. Technol. B 28 C4C11-C4C14 (2010)
Ken Nagashima, Masayuki Abe, Seizo Morita, Noriaki Oyabu, Kei Kobayashi, Hirofumi Yamada, Masahiro Ohta, Ryohei Kokawa, Ryota Murai, Hiroyoshi Matsumura, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue and Yusuke Mori
Enhancement of femtosecond laser-induced nucleation of protein in a gel solution
Appl. Phys. Lett. 96 1-3 (2010)
Ryota Murai, Hiroshi Y. Yoshikawa, Yoshinori Takahashi, Mihoko Maruyama, Shigeru Sugiyama, Gen Sazaki, Hiroaki Adachi, Kazufumi Takano, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue and Yusuke Mori
Molecular Mechanism of Multi-drug Efflux Transporter Revealed by the Crystal Structures
Membrane 35 72-79 (2010)
Satoshi Murakami
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2009
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Femtosecond laser processing of protein crystals grown in agarose gel
J. Cryst. Growth 312 73-78 (2009)
Hitoshi Hasenaka, Shigeru Sugiyama, Mika Hirose, Noriko Shimizu, Tomoya Kitatani, Yoshinori Takahashi, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Hiroyoshi Matsumura
A Manipulating Tool for Protein Microcrystals in Solution Using Adhesive Materials
Jpn. J. Appl. Phys. 48 1-2 (2009)
Tomoya Kitatani, Hiroaki Adachi, Shigeru Sugiyama, Hiroyoshi Matsumura, Ryota Murai, Yoshinori Takahashi, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Kazufumi Takano
Promotion of Crystal Nucleation of Protein by Semi-Solid Agarose Gel
Appl. Phys. Express 2 1-3 (2009)
Kana Tanabe, Mika Hirose, Ryota Murai, Shigeru Sugiyama, Noriko Shimizu, Mihoko Maruyama, Yoshinori Takahashi, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Yusuke Mori, Eiichi Mizohata, Tsuyoshi Inoue and Hiroyoshi Matsumura
Growth of Large Protein Crystals by Top-Seeded Solution Growth Together with the Floating and Solution-Stirring Technique
Cryst. Growth Des. 9 5227-5232 (2009)
Noriko Shimizu, Shigeru Sugiyama, Mihoko Maruyama, Hiroshi Y. Yoshikawa, Yoshinori Takahashi, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue Hiroyoshi Matsumura and Yusuke Mori
Femtosecond Laser Processing of Agarose Gel Surrounding Protein Crystals for Development of an Automated Crystal Capturing System
Jpn. J. Appl. Phys.48 1-5 (2009)
Shigeru Sugiyama, Hitoshi Hasenaka, Mika Hirose, Noriko Shimizu, Tomoya Kitatani, Yoshinori Takahashi, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Hiroyoshi Matsumura
Protein Crystallization in Agarose Gel with High Strength: Developing an Automated System for Protein Crystallographic Processes
Jpn. J. Appl. Phys. 48 1-5 (2009)
Shigeru Sugiyama, Kana Tanabe, Mika Hirose, Tomoya Kitatani, Hitoshi Hasenaka, Yoshinori Takahashi, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Yusuke Mori, Tsuyoshi Inoue and Hiroyoshi Matsumura
Dynamic nature of disulfide bond formation catalysts revealed by crystal structures of DsbB
EMBO J. 28 779-791 (2009)
Keiji Inaba, Satoshi Murakami, Atsushi Nakagawa, Hiroka Iida, Mai Kinjo, Koreaki Ito and Mamoru Suzuki
Femtosecond laser-induced nucleation of protein in agarose gel
J. Cryst. Growth 311 956-959 (2009)
Hiroshi Y. Yoshikawa, Ryota Murai, Shigeru Sugiyama, Gen Sazaki, Tomoya Kitatani, Yoshinori Takahashi, Hiroaki Adachi, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue, Kazufumi Takano and Yusuke Mori
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2008
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Evaluation and Improvement of a Technique to Manipulate Protein Crystals in Solution
Jpn. J. Appl. Phys. 47 8995-8997 (2008)
Tomoya Kitatani, Hiroaki Adachi, Shigeru Sugiyama, Hiroyoshi Matsumura, Ryota Murai, Yoshinori Takahashi, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Kazufumi Takano
Crystallization and preliminary X-ray crystallographic analysis of Ca2+-free primary Ca2+-sensor of Na+/Ca2+ exchanger
Acta Crystallogr. F64 1125-1127 (2008)
Masashi Mima, Chika Kawai, Kumsun Paku, Koji Tomoo, Toshimasa Ishida, Shigeru Sugiyama, Hiroshi Matsumura, Tomoya Kitatani, Hiroshi Y. Yoshikawa, Syou Maki, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Satomi Kita and Takahiro Iwamoto
Laser energy dependence on femtosecond laser-induced nucleation of protein
Appl. Phys.A 93 911-915 (2008)
Hiroshi Y. Yoshikawa, Ryota Murai, Syou Maki, Tomoya Kitatani, Shigeru Sugiyama, Gen Sazaki, Hiroaki Adachi, Tsuyoshi Inoue, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Takatomo Sasaki and Yusuke Mori
Crystallization and preliminary neutron diffraction studies of HIV-1 protease cocrystallized with inhibitor KNI-272
Acta Crystallogr. F64 1003-1006 (2008)
Hiroshi Matsumura, Motoyasu Adachi, Shigeru Sugiyama, Shino Okada, Megumi Yamakami, Taro Tamada, Koushi Hidaka, Yoshio Hayashi, Tooru Kimura, Yoshiaki Kiso, Tomoya Kitatani, Syou. Maki, Hiroshi Y. Yoshikawa, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Ryota Kuroki and Yusuke Mori
Functional role of transmembrane Helix 6 in drug binding and transport by the ABC transporter MsbA
Biochemistry 47 10904-10914 (2008)
Barbara Woebking, Saroj Velamakanni, Luca Federici, Markus A.Seeger, Satoshi Murakami and Hendrik van Veen
Crystallization and preliminary X-ray diffraction studies of an RNA aptamer in complex with the human IgG Fc fragment
Acta Crystallogr. F64 942-944 (2008)
Shigeru Sugiyama, Yusuke Nomura, Taiichi Sakamoto, Tomoya Kitatani, Asako Kobayashi, Shin Miyakawa, Yoshinori Takahashi, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Yoshikazu Nakamura and Hiroyoshi Matsumura
Multidrug efflux transporter, AcrB-the pumping mechanism
Curr. Opin. Struct. Biol. 18 459-465 (2008)
Satoshi Murakami
Effect of solution flow by rotary shaker on protein crystallization
J. Cryst. Growth 310 2168-2172 (2008)
Ryota Murai, Hiroshi Y. Yoshikawa, Hisato Kawahara, Syou Maki, Shigeru Sugiyama, Tomoya Kitatani, Hiroaki Adachi, Kazufumi Takano, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue, Takatomo Sasaki and Yusuke Mori
New progress in crystallization technology of membrane protein and introduction of pharamaceutical innovation value chain
Yakugaku Zasshi 128 497-505 (2008)
Tsuyoshi Inoue, Hiroaki Adachi, Satoshi Murakami, Kazufumi Takano, Hiroyoshi Matsumura, Yusuke Mori, Yoshifumi Fukunishi, Haruki Nakamura, Takayoshi Kinoshita, Isao Nakanishi, Yasushi Okuno, Satoshi Minakata, Shinji Shimojo and Tsuneaki Sakata
Protein crystallization in a 100 nl solution with new stirring equipment
J. Synchrotron Radiat. 15 269-272 (2008)
Syou Maki, Ryota Murai, Hiroshi Y. Yoshikawa, Tomoya Kitatani, Shinya Nakata, Hisato Kawahara,Hitoshi Hasenaka, Asako Kobayashi, Shino Okada, Shigeru Sugiyama, Hiroaki Adachi, Hiroshi Matsumura, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Takatomo Sasaki and Yusuke Mori
New Technique of Manipulating a Protein Crystal Using Adhesive Material
Appl. Phys. Express 1 1-3 (2008)
Tomoya Kitatani, Shigeru Sugiyama, Hiroyoshi Matsumura, Hiroaki Adachi, Hiroshi Y. Yoshikawa, Syou Maki, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Kazufumi Takano
Molecular mechanism of multi-drug resistance
Nihon Rinsho 66 193-203 (2008)
Satoshi Murakami
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2007
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Structure and reaction mechanism of multi-drug efflux transporter
Tanpakushitsu Kakusan Koso 52 406-414 (2007)
Satoshi Murakami
Femtosecond laser-induced cleaving of protein crystal in water solution
Appl. Surf. Sci. 253 6447-6450 (2007)
Masafumi Kashii, Yoichiroh Hosokawa, Hiroshi Kitano, Hiroaki Adachi, Yusuke Mori, Kazufumi Takano, Hiroyoshi Matsumura, Tsuyoshi Inoue, Satoshi Murakami, Kazuomi Sugamoto, Hideki Yoshikawa, Takatomo Sasaki and Hiroshi Masuhara
Drug Development Value Chain Constructed by Collaboration Between The SOSHO Project and The NPO BIOGRID
AIP (American Inst. of Physics) Conf. Proc. 902 85-88 (2007)
Tsuyoshi Inoue, Yuji Kado, Keiji Tokuoka, Hiroyoshi Matsumura, Yasushi Kai, Yusuke Mori, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Yoshifumi Fukunishi, Haruki Nakamura, Takayoshi Kinoshita, Isao Nakanishi, Yasushi Okuno, Satoshi Minakata and Tsuneaki Sakata
Development of Protein Crystallization and Processing : Femtosecond Laser, All Solid-State 193 nm Laser, and Solution Stirring Techniques
Proceedings of SPIE 6460 1-10 (2007)
Yusuke Mori, Kazufumi Takano, Hiroaki Adachi, Tsuyoshi Inoue, Satoshi Murakami, Hiroyoshi Matsumura, Masafumi Kashii, Hiroshi Y. Yoshikawa, Syou Maki, Tomoya Kitatani, Shino Okada and Takatomo Sasaki
Structural basis of xenobiotic recognition by a bacterial xenobiotic exporter
Seikagaku 79 542-549 (2007)
Satoshi Murakami, Akihito Yamaguchi
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2006
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Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation
Cell 127 789-801 (2006)
Kenji Inaba, Satoshi Murakami, Mamoru Suzuki, Atsushi Nakagawa, Eiki Yamashita, Kengo Okada and Koreaki Ito
Application of Femtosecond Laser Ablation for Detaching Grown Protein Crystals from a Glass Capillary Tube
J. Biosci. Bioeng. 102 372-374 (2006)
Masafumi Kashii, Ryo Fujisawa, Hiroaki Adachi, Yusuke Mori, Takatomo Sasaki, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya, Hiroyoshi Matsumura, Tsuyoshi Inoue, Satoshi Murakami, Kazuomi Sugamoto and Hideki Yoshikawa
Crystal structures of a multidrug transporter reveal a functionally rotating mechanism
Nature 443 173-179 (2006)
Satoshi Murakami, Ryosuke Nakashima, Eiki Yamashita, Takashi Matsumoto and Akihito Yamaguchi
Effect of ultrasonic irradiation on protein crystallization
J. Cryst. Growth 292 437-440 (2006)
Keisuke Kakinouchi, Hiroaki Adachi, Hiroyoshi Matsumura, Tsuyoshi Inoue, Satoshi Murakami, Yusuke Mori, Yuichi Koga, Kazufumi Takano and Shigenori Kanaya
Cooling-rate screening system for determining protein crystal growth conditions
J. Cryst. Growth 292 433-436 (2006)
Ryota Murai, Shinya Nakata, Masafumi Kashii, Hiroaki Adachi, Ai Niino, Kazufumi Takano, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Takatomo Sasaki
Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNAGlu
Acta Crystallogr. F62 368-371 (2006)
Tomoyuki Numata, Yoshiho Ikeuchi, Shuya Fukai, Hiroaki Adachi, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Takatomo Sasaki, Tsutomu Suzuki and Osamu Nureki
Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus
Acta Crystallogr. F62 376-380 (2006)
Tomoya Tsukazaki, Hiroyuki Mori, Shuya Fukai, Tomoyuki Numata, Anna Perederina, Hiroaki Adachi, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Takatomo Sasaki, Dmitry G. Vassylyev, Osamu Nureki and Koreaki Ito
Solution-Stirring Method Improves Crystal Quality of Human Triosephosphate Isomerase
J. Biosci. Bioeng. 101 83-86 (2006)
Hiroaki Adachi, Ai Niino, Takayoshi Kinoshita, Masaichi Warizaya, Riyo Maruki, Kazufumi Takano, Hiroyoshi Matsumura, Tsuyoshi Inoue, Satoshi Murakami, Yusuke Mori and Takatomo Sasaki
Crystallization and preliminary crytallographic analysis of orotidine 5f-monophosphate decarboxylase from human malaria parasite Plasmodium falciparum
Acta Crystallogr. F62 542-545 (2006)
Sudaratana R. Krungkrai, Keiji Tokuoka, Yukiko Kusakari, Tsuyoshi Inoue, Hiroaki Adachi, Hiroyoshi Matsumura, Kazufumi Takano, Satoshi Murakami, Yusuke Mori, Yashushi Kai and Toshihiro Horii
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2005
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Protein Cryocrystallography Using Laser-Processed Crystal
Jpn. J. Appl. Phys. 44 L54-L56 (2005)
Hiroshi Kitano, Hiroyoshi Matsumura, Hiroaki Adachi, Satoshi Murakami, Kazufumi Takano, Tsuyoshi Inoue, Yusuke Mori, Masaaki Doi and Takatomo Sasaki
Effect of laser irradiation on enzyme activity
Jpn. J. Appl. Phys. 44 8216-8218 (2005)
Satoshi Murakami, Masafumi Kashii, Hiroshi Kitano, Hiroaki Adachi, Kazufumi Takano, Hiroyoshi Matsumura, Tsuyoshi Inoue, Yusuke Mori, Masaaki Doi, Kazuomi Sugamoto, Hideki Yoshikawa and Takatomo Sasaki
Semiautomatic Protein Crystallization System Featuring Crystallization Solution Preparation Function
Jpn. J. Appl. Phys. 44 6302-6303 (2005)
Hiroaki Adachi, Hiroyoshi Matsumura, Tsuyoshi Inoue, Ai Niino, Kazufumi Takano, Satoshi Murakami, Yusuke Mori and Takatomo Sasaki
Direct interaction of multidrug efflux transporter AcrB and outer membrane channel TolC detected via site-directed disulfide cross-linking
Biochemistry 44 11115-11121 (2005)
Norihisa Tamura, Satoshi Murakami, Yoshiaki Oyama, Masaji Ishiguro and Akihito Yamaguchi
Processing of Membrane Protein Crystal Using UV Laser Irradiation
J. Biosci. Bioeng. 100 50-53 (2005)
Hiroshi Kitano, Satoshi Murakami, Hiroaki Adachi, Hiroyoshi Matsumura, Kazufumi Takano, Tsuyoshi Inoue, Yusuke Mori, Masaaki Doi and Takatomo Sasaki
Protein Crystal Growth Using Laser-Processed Seed Crystals
Jpn. J. Appl. Phys. 44 3177-3179 (2005)
Kengo Takeuchi, Hiroshi Kitano, Hiroaki Adachi, Yusuke Mori, Takatomo Sasaki, Hiroyoshi Matsumura, Tsuyoshi Inoue, Satoshi Murakami, Masaaki Doi, Yuichi Koga, Kazufumi Takano and Shigenori Kanaya
Protein Crystallization by Combining Laser Irradiation and Solution-Strring Techniques
Jpn. J. Appl. Phys. 44 1365-1366 (2005)
Hiroaki Adachi, Ai Niino, Satoshi Murakami, Kazufumi Takano, Hiroyoshi Matsumura, Takayoshi Kinoshita, Masaichi Warizawa, Tsuyoshi Inoue, Yusuke Mori and Takatomo Sasaki
Temperature-Screening System for Determining Protein Crystallization Conditions
Jpn. J. Appl. Phys. 44 4080-4083 (2005)
Hiroaki Adachi, Ai Niino, Kazufumi Takano, Hiroyoshi Matsumura, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori and Takatomo Sasaki
Femtosecond Laser Processing of Protein Crystals in Crystallization Drop
Jpn. J. Appl. Phys. 44 L873-L875 (2005)
Masafumi Kashii, Hiroshi Kitano, Yoichiroh Hosokawa, Hiroaki Adachi, Yusuke Mori, Takatomo Sasaki, Hiroshi Masuhara, Kazufumi Takano, Hiroyoshi Matsumura, Tsuyoshi Inoue, Satoshi Murakami, Kazuomi Sugamoto and Hideki Yoshikawa
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2004
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Membrane Protein Crystallization Using Laser Irradiation
Jpn. J. Appl. Phys. 43 L1376-L1378 (2004)
Hiroaki Adachi, Satoshi Murakami, Ai Niino, Hiroyoshi Matsumura, Kazufumi Takano,Tsuyoshi Inoue, Yusuke Mori, Akihito Yamaguchi and Takatomo Sasaki
Extramembrane Central Pore of Multidrug Exporter AcrB in Escherichia coli Plays an Important Role in Drug Transport
J. Biol. Chem. 279 3743-3748 (2004)
Satoshi Murakami, Norihisa Tamura, Asami Saito, Takahiro Hirata and Akihito Yamaguchi
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2003
2002
2001
1998
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